What Does A Passing Events Dataset Look Like?#
Note: This next step assumes you have done all the steps in the below code
Code for occurrences and events for example dataset
>>> # this is each individual step as a command
>>> import pandas as pd
>>> import corella
>>>
>>> # first, events
>>> events = pd.read_csv('<NAME-OF-EVENTSE>.csv')
>>> events = corella.set_events(dataframe=events,
... eventType='type',
... samplingProtocol='Observation',
... Event='name',
.... event_hierarchy={1: "Site Visit", 2: "Sample", 3: "Observation"})
>>> events = corella.set_datetime(dataframe=events,
... eventDate='date',
... string_to_datetime=True,
... yearfirst=False,
... dayfirst=True)
>>> events = corella.set_locality(dataframe=events,
>>> locality='location')
>>>
>>> # now, set_occurrences
>>> occ = pd.read_csv('<NAME-OF-OCCURRENCES>.csv')
>>> occ = corella.set_scientific_name(dataframe=occ,
... scientificName='Species')
>>> occ = corella.set_coordinates(dataframe=occ,
... decimalLatitude='Latitude',
... decimalLongitude='Longitude',
... geodeticDatum='WGS84',
... coordinatePrecision=0.1)
>>> occ = corella.set_datetime(dataframe=occ,
... eventDate='Collection_date',
... string_to_datetime=True,
... yearfirst=False,
... dayfirst=True)
>>> corella.set_occurrences(dataframe=occ,
... add_eventID=True,
... occurrenceStatus='PRESENT',
... occurrenceID=True,
... add_eventID=True,
... events=events,
... eventType='Observation')
Before you write your metadata using paperbark or package your Darwin Core Archive using galaxias,
run check_data() for the final time.
>> corella.check_data(occurrences=occ,
... events=events)
If everything passes, you will get the following output:
Traceback (most recent call last):
File "/Users/buy003/Documents/GitHub/corella-python/docs/source/corella_user_guide/longitudinal_studies/events_workflow.py", line 133, in <module>
events = corella.set_events(dataframe=events,eventType='type',samplingProtocol='Observation',
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
TypeError: set_events() got an unexpected keyword argument 'random_id'